Merge pull request #5 from compomics/deeplc-compatibility

Deeplc/tensorflow compatibility

Author: rodvrees

im2deep/__init__.py

@@ -1,3 +1,3 @@
 """IM2Deep: Deep learning framework for peptide collisional cross section prediction."""
 
-__version__ = "0.1.9"
+__version__ = "0.2.0"

im2deep/im2deep.py

@@ -31,7 +31,7 @@ def predict_ccs(
     if model_name == "tims":
         path_model = Path(__file__).parent / "models" / "TIMS"
 
-    path_model_list = list(path_model.glob("*.hdf5"))
+    path_model_list = list(path_model.glob("*.keras"))
     if use_single_model:
         LOGGER.debug("Using model {}".format(path_model_list[2]))
         path_model_list = [path_model_list[2]]

im2deep/models/TIMS/full_hc_peprec_CCS_v4_1fd8363d9af9dcad3be7553c39396960.hdf5 renamed to im2deep/models/TIMS/full_hc_peprec_CCS_v4_1fd8363d9af9dcad3be7553c39396960.keras

@@ -20,7 +20,7 @@ dynamic = ["version"]
 requires-python = ">=3.8"
 dependencies = [
     "click",
-    "deeplc==2.2.38",
+    "deeplc",
     "psm_utils",
     "pandas",
     "numpy",