We need to add figures 2 and 3 from the InlP paper, https://www.microbiologyresearch.org/docserver/fulltext/mgen/8/7/mgen000828.pdf. We have some code, written when the paper was published, that was used to generate those figures, but it's likely out of date and wasn't written to use MolEvolvR's job outputs. The figure will need to be integrated into the MolEvolvR web app, both for displaying on the site and including in the downloadable report.

Any progress on the following tasks would be appreciated:

• getting the figure to render with its original inputs
• adapting the code to use MolEvolvR's job output

I've included a sample MolEvolvR job output, 5uNQ9l, to demonstrate what files are typically included in a MolEvolvR job.

5uNQ9l_full.tar.gz

See PR #91 for the current code. If you self-assign this issue also assign yourself to that PR. Once your PR is ready, you can convert it from a draft to a regular PR and request review. If you prefer to not use that PR as a starting point, you're also free to create your own.