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    155 repositories

    • first-steps-with-python-training

      Public
      repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •17•64•6•0•Updated Sep 22, 2025Sep 22, 2025

    • sparql-examples-utils

      Public
      Help maintain your SPARQL examples collection
      sparqljunit5
      Java
      •
      Other
      •2•0•0•0•Updated Sep 22, 2025Sep 22, 2025

    • easybuild-easyconfigs

      Public
      A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
      Python
      •
      GNU General Public License v2.0
      •758•3•0•0•Updated Sep 22, 2025Sep 22, 2025

    • intro-machine-learning-training

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •18•54•0•0•Updated Sep 22, 2025Sep 22, 2025

    • training-collection

      Public
      Collection of bioinformatics training materials
      Python
      •
      Other
      •189•1.1k•1•0•Updated Sep 21, 2025Sep 21, 2025

    • single-cell-python-training

      Public
      HTML
      •
      Creative Commons Attribution 4.0 International
      •1•5•0•0•Updated Sep 21, 2025Sep 21, 2025

    • spatial-transcriptomics-training

      Public
      R
      •
      Creative Commons Attribution 4.0 International
      •2•5•1•0•Updated Sep 21, 2025Sep 21, 2025

    • glittr-stats

      Public
      General statistics of Glittr.org. Comes with the manuscript.
      PostScript
      •0•2•0•0•Updated Sep 21, 2025Sep 21, 2025

    • cancer-variants-training

      Public
      Lua
      •
      Creative Commons Attribution 4.0 International
      •2•6•0•0•Updated Sep 21, 2025Sep 21, 2025

    • sib-software-stack

      Public
      Scripts and documentation to deploy the SIB software stack
      Perl
      •0•1•0•0•Updated Sep 19, 2025Sep 19, 2025

    • images-training

      Public
      0•0•0•0•Updated Sep 19, 2025Sep 19, 2025

    • fhdportal-cli

      Public
      CLI validation tool for metadata submission on FHDportal
      PHP
      •1•0•0•0•Updated Sep 19, 2025Sep 19, 2025

    • containers-introduction-training

      Public
      Course website "Docker and Singularity for reproducible research: getting started with containers"
      trainingdockerdockerfiletutorialcontainerssingularityteaching
      HTML
      •
      Creative Commons Attribution 4.0 International
      •14•33•1•0•Updated Sep 19, 2025Sep 19, 2025

    • single-cell-r-training

      Public
      SIB course on single cell transcriptomics by mostly using the Seurat pipeline
      HTML
      •
      Creative Commons Attribution 4.0 International
      •1•6•1•0•Updated Sep 18, 2025Sep 18, 2025

    • training-cookbook

      Public
      Other
      •0•0•2•0•Updated Sep 18, 2025Sep 18, 2025

    • FAIR-training-flowchart

      Public
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Sep 18, 2025Sep 18, 2025

    • void-generator

      Public
      Calculate statistics for use in a Service Description or Void file
      Java
      •
      MIT License
      •8•14•22•0•Updated Sep 16, 2025Sep 16, 2025

    • sparql-llm

      Public
      🦜✨ Chat system and reusable components to improve LLMs capabilities when generating SPARQL queries
      sparqlsparql-query-builderexpasyllm
      Jupyter Notebook
      •
      MIT License
      •11•62•3•1•Updated Sep 16, 2025Sep 16, 2025

    • fhdportal-docker

      Public
      This application is a demonstrator standalone version of FHDportal. For evaluation only.
      1•0•0•0•Updated Sep 16, 2025Sep 16, 2025

    • fhdportal-app

      Public
      A VueJS (3) front end of the FHDportal for the Federated EGA (European Genome-phenome Archive).
      1•0•0•0•Updated Sep 16, 2025Sep 16, 2025

    • RNAseq-introduction-training

      Public
      Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.
      coursernaseq
      Creative Commons Attribution 4.0 International
      •8•15•1•0•Updated Sep 16, 2025Sep 16, 2025

    • fhdportal-api

      Public
      An API for the FHDportal from the Federated EGA (European Genome-phenome Archive).
      1•0•0•0•Updated Sep 16, 2025Sep 16, 2025

    • sparql-mcp

      Public
      A MCP server for SPARQL query generation from natural language
      Rust
      •
      MIT License
      •0•2•0•0•Updated Sep 14, 2025Sep 14, 2025

    • sparqlr

      Public
      R package to query SPARQL endpoints
      R
      •
      MIT License
      •0•0•0•0•Updated Sep 12, 2025Sep 12, 2025

    • obelisk-docker

      Public
      Shell
      •0•1•0•0•Updated Sep 12, 2025Sep 12, 2025

    • sparql-examples

      Public
      A set of SPARQL examples that are used in different SIB resources
      HTML
      •
      Other
      •24•24•8•4•Updated Sep 9, 2025Sep 9, 2025

    • advanced-statistics

      Public
      Webpage for SIB's advanced statistics course
      Other
      •5•12•0•0•Updated Sep 4, 2025Sep 4, 2025

    • multiomics-data-analysis-and-integration-training

      Public
      HTML
      •
      Other
      •8•23•1•0•Updated Sep 4, 2025Sep 4, 2025

    • unix-first-steps-training

      Public
      SIB First Steps with UNIX course
      4•11•0•0•Updated Sep 3, 2025Sep 3, 2025

    • dsWrappr

      Public
      Split a R package into a "client" and "server" version , datashield ready.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 3, 2025Sep 3, 2025