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    40 repositories

    • LongCOVID-RNAseq

      Public
      C
      •0•0•0•0•Updated Aug 18, 2025Aug 18, 2025

    • SpatialProteomics

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Jul 8, 2025Jul 8, 2025

    • temporal-scheduler

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • BioDepot-workflow-builder

      Public
      💻 GUI for creating bioinformatics workflows from 🐳 Docker containers:
      Python
      •
      Other
      •22•65•4•1•Updated Jun 2, 2025Jun 2, 2025

    • scRNA-serverless

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated May 12, 2025May 12, 2025

    • TrimGalore

      Public
      Perl
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 9, 2025Mar 9, 2025

    • biodepot-launcher

      Public
      JavaScript
      •
      MIT License
      •0•2•0•0•Updated Jan 27, 2025Jan 27, 2025

    • nanopore-public-workflows

      Public
      Python
      •0•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • nanopore-public

      Public
      Python
      •0•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • GDC_Genomic_Workflows

      Public
      C
      •
      MIT License
      •0•1•0•0•Updated Mar 13, 2024Mar 13, 2024

    • workflows-gitpod

      Public
      Python
      •0•0•0•0•Updated Jan 31, 2024Jan 31, 2024

    • workflows

      Public
      C
      •
      Other
      •0•0•0•0•Updated Nov 30, 2023Nov 30, 2023

    • nanopore-gpu

      Public
      Python
      •
      Other
      •1•5•0•0•Updated Sep 19, 2023Sep 19, 2023

    • aws-s3-explorer

      Public
      Customized version of aws-s3-explorer
      JavaScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 7, 2023Apr 7, 2023

    • MorphicConsortiumWebSite

      Public
      https://elijah1368.github.io/MorphicConsortium/
      CSS
      •2•1•0•0•Updated Dec 16, 2022Dec 16, 2022

    • fiji-clij

      Public
      Fiji with GPU functionality
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Oct 15, 2022Oct 15, 2022

    • fiji-demo

      Public
      Python
      •0•3•0•0•Updated Sep 2, 2022Sep 2, 2022

    • LINCS_RNAseq_cpp

      Public
      Optimized tools for barcoded RNA-seq
      C
      •
      MIT License
      •2•2•0•0•Updated Aug 11, 2021Aug 11, 2021

    • kallisto-sam

      Public
      Modified kallisto that outputs sam lines to stdout instead of tsv and pseudobam files
      C
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jul 14, 2021Jul 14, 2021

    • serverless-UMI

      Public
      C++
      •
      Other
      •1•0•0•1•Updated Jun 4, 2021Jun 4, 2021

    • Workflow-repository

      Public
      A collection of containerized workflows for the BioDepot-Workflow-Builder
      C
      •0•0•0•0•Updated Oct 19, 2019Oct 19, 2019

    • nbdocker

      Public
      A Jupyter Notebook extension for Docker
      JavaScript
      •5•15•0•0•Updated Sep 2, 2019Sep 2, 2019

    • smith-waterman-serverless

      Public
      Serverless implementation of Smith-Waterman on all-vs-all human protein set
      0•0•0•0•Updated Jun 24, 2019Jun 24, 2019

    • RNA-seq-lambda

      Public
      Rapid RNA-seq pipeline using AWS lambda functions for alignment
      Python
      •2•13•0•0•Updated Mar 22, 2019Mar 22, 2019

    • LINCS_RNAseq_cpp_old

      Public
      Optimized software for barcoded Unique Molecular Identifier (UMI) RNAseq
      C++
      •
      MIT License
      •0•1•0•0•Updated Mar 17, 2019Mar 17, 2019

    • TaskPerform_AWSLambda

      Public
      Computational tasks performance in parallel using AWS Lambda and example
      Python
      •1•6•0•0•Updated Aug 2, 2018Aug 2, 2018

    • star

      Public
      Star aligner container with wrapper for quantification
      0•0•0•0•Updated Jul 30, 2018Jul 30, 2018

    • dtoxs_analysis

      Public
      Docker image for Differential Expression Analysis on DToxS Data
      R
      •0•0•0•0•Updated Jul 29, 2018Jul 29, 2018

    • sratoolkit

      Public
      Docker image for sratoolkit
      Perl
      •0•0•0•0•Updated Jul 28, 2018Jul 28, 2018

    • downloadURL-bwbWidgetImage

      Public
      Docker image for Bwb downloadURL widget
      Shell
      •0•0•0•0•Updated Jul 28, 2018Jul 28, 2018