Centre de Bioinformatique de Bordeaux

All

18 repositories

TrialMatchAI
Public
TrialMatchAI aims to seamlessly match cancer patients to clinical trials based on their unique genomic and clinical profiles using AI
python artificial-intelligence cancer-genomics clinical-trials personalized-medicine personalized-recommendation large-language-models
Python
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Other
•1•16•0•1•Updated Sep 23, 2025Sep 23, 2025
linda
Public
Web application for managing experimental and environmental metadata for plant experiments
nodejs phenotyping arangodb ontologies angular8 miappe
TypeScript
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MIT License
•0•2•13•7•Updated Sep 11, 2025Sep 11, 2025
Seurat-Integrate
Public
R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an integration benchmarking toolkit.
scrna-seq data-integration batch-effects single-cell-genomics single-cell-rna-seq seurat
R
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Other
•3•31•4•0•Updated Sep 3, 2025Sep 3, 2025
COBRA
Public
Multi-omics data integrative web application for plant-virus resistance gene
HTML
•3•1•0•0•Updated Sep 2, 2025Sep 2, 2025
virhunter
Public
Deep Learning method for novel virus detection in sequencing data
Python
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Other
•2•10•1•0•Updated Mar 19, 2025Mar 19, 2025
DeconvoliSTa
Public
R
•0•0•0•0•Updated Oct 29, 2024Oct 29, 2024
DIMet
Public
Differential analysis of targeted Isotope-labeled Metabolomics data
python metabolomics differential-expression isotope-labeling-experiments metabolomics-pipeline
Python
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MIT License
•2•4•0•0•Updated Sep 23, 2024Sep 23, 2024
ProteomX
Public
Statistical and Functional analysis and interpretation of proteomics data
Python
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MIT License
•0•0•28•6•Updated Sep 4, 2024Sep 4, 2024
TraceGroomer
Public
Format and normalise tracer metabolomics given file(s), to produce the .csv files which are ready for DIMet analysis.
Python
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MIT License
•1•1•0•0•Updated Aug 6, 2024Aug 6, 2024
TempAI
Public
Python
•0•1•0•0•Updated Jul 18, 2024Jul 18, 2024
dypfish
Public
Python library for statistical analysis of mRNA and protein distributions in fluorescent microscopy images
Python
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Other
•2•2•8•5•Updated Oct 3, 2023Oct 3, 2023
SalienceNet
Public
Python
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MIT License
•1•8•0•0•Updated Jul 31, 2023Jul 31, 2023
tflex
Public
R
•0•0•0•0•Updated May 10, 2023May 10, 2023
decontaminator
Public
deep learning contamination filtering tool
genomics rnaseq viruses deep-learning
Python
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Other
•0•0•0•0•Updated Jan 22, 2023Jan 22, 2023
DeepMeta
Public
Deep Learning network to segment lungs and metastases in mouse MRI images.
Python
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MIT License
•1•1•0•1•Updated Jul 20, 2022Jul 20, 2022
DeepSpot
Public
DeepSpot is a deep learning method for the enhancement of mRNA fluorescent spots in microscopy images
Python
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Other
•3•14•0•0•Updated Dec 1, 2021Dec 1, 2021
MICADo
Public
Looking for mutations in PacBio cancer data: an alignment-free method
Python
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Other
•2•8•1•0•Updated Nov 10, 2016Nov 10, 2016
MIX
Public
MIX: Combining multiple assemblies from NGS data
Python
•6•13•4•0•Updated Apr 14, 2016Apr 14, 2016