Discussions

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  Dropping group of cells to improve pseudotime projection

  mitchTwoTimes started Jul 20, 2022 in General

  

  

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  Opposite direction shown by stochastic vs dynamical mode

  duplicate Duplicated issue

  mayurdoke6 asked Oct 19, 2022 in Q&A · Unanswered

  

  

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  Preselecting genes based on known involvement

  AngCamp started Sep 13, 2022 in General

  

  

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  Multi-species analyses

  enhancement

  st-tky asked Oct 4, 2022 in Q&A · Unanswered

  

  

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  Scvelo/Cellrank -Feasible for single nuclei RNA velocity anlaysis? (dynamical model)

  AkilaRanjith asked Sep 21, 2022 in Q&A · Unanswered

  

  

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  How to load .h5 files for scvelo analyses?

  yojetsharma asked Aug 30, 2022 in Q&A · Unanswered

  

  

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  scv.utils.get_cell_ transitions() different results with indices and with UMAP basis

  alexandra-valeanu asked Aug 1, 2022 in Q&A · Unanswered

  

  

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  Is it possible for scvelo to get the correct result from cells with 3 day interval

  duplicate Duplicated issue

  BW15061999 asked Jul 26, 2022 in Q&A · Answered

  

  

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  Streamline thickness in velocity velocity_embedding_stream

  torgheh asked Jul 21, 2022 in Q&A · Answered

  

  

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  RuntimeError using scVelo

  Dannyxu123 asked Jul 5, 2022 in Q&A · Answered

  

  

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  Get unnormal spliced/unspliced proportion

  HuangDDU asked Jun 29, 2022 in Q&A · Answered

  

  

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  Different results with different models (stochastic vs dynamical)

  duplicate Duplicated issue

  shaln asked Jun 28, 2022 in Q&A · Answered

  

  

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  Root cells are too dispersed

  MatsuSui asked Jun 18, 2022 in Q&A · Unanswered

  

  

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  scv.tl.recover_dynamics in stochastic mode

  duplicate Duplicated issue

  kxxxjo asked Jun 10, 2022 in Q&A · Answered

  

  

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  Plotting fitted dynamics

  huizizhang949 asked Jun 11, 2022 in Q&A · Unanswered

  

  

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  multi-sample velocity

  chansigit asked May 20, 2022 in Q&A · Unanswered

  

  

  

  

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  scv.pl.scatter function

  huizizhang949 asked May 26, 2022 in Q&A · Answered

  

  

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  scvelo.pp.filter_and_normalize n_top_genes

  xzhang08 asked May 23, 2022 in Q&A · Answered

  

  

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  Split density plots by category for axes of scatterplots

  CurlsForScience asked May 24, 2022 in Q&A · Unanswered

  

  

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  How the clusters are identified?

  huizizhang949 asked May 24, 2022 in Q&A · Answered

  

  

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  With what does scv.utils.merge merges adata and loom file?

  parkjooyoung99 asked May 20, 2022 in Q&A · Unanswered

  

  

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  ScVelo using merged loom or individual loom ?

  meghamsh738 asked Apr 30, 2022 in Q&A · Unanswered

  

  

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  Interpreting data: can velocity estimate catch self-renewal?

  france-hub asked Apr 28, 2022 in Q&A · Unanswered

  

  

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  ranked list of the genes for entire dataset

  AZanster asked Apr 28, 2022 in Q&A · Unanswered

  

  

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  Differential velocity between clusters and conditions

  natallah asked Apr 27, 2022 in Q&A · Unanswered

  

  

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