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Initial work for new 4.0 API #90

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@RalfG RalfG commented Apr 24, 2025

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@RalfG RalfG changed the base branch from master to dev April 24, 2025 22:28
RalfG added 2 commits June 5, 2025 12:25
- Remove ensemble-model mode (different kernel sizes).
- Split of model loading to separate function.
- Make dataset take peptidoforms instead of PSMs.
- Get unique peptidoforms before predicting and keep inverse index for mapping back predictions to input PSM list.
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