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Aligning new sequences to an existing HMM and updating it iteratively?

Status: Open.

#22 In Gaius-Augustus/learnMSA;

· pentamorfico opened on Aug 27, 2025

Provide command line option to quickly convert alignment format with learnMSA

enhancementNew feature or requestNew feature or request

Status: Open.

#20 In Gaius-Augustus/learnMSA;

· felbecker opened on Apr 10, 2025

Parallel Viterbi fails with cryptic error message when there is only a single chunk

bugSomething isn't workingSomething isn't working

Status: Open.

#17 In Gaius-Augustus/learnMSA;

· felbecker opened on Jan 5, 2025

Is the MSA (Multiple Sequence Alignment) generated by learnMSA2 suitable for phylogenetic analysis?

enhancementNew feature or requestNew feature or request

Status: Open.

#16 In Gaius-Augustus/learnMSA;

· permia opened on Nov 19, 2024

Improve runtime for long proteins

enhancementNew feature or requestNew feature or request

Status: Open.

#9 In Gaius-Augustus/learnMSA;

· felbecker opened on Jul 11, 2024

Automatically remove stop codon indicators

enhancementNew feature or requestNew feature or request

Status: Open.

#8 In Gaius-Augustus/learnMSA;

· felbecker opened on Jul 11, 2024