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24 followers · 47 following
  • Harvard Medical School, Department of Immunology
  • Boston

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Achievement: Arctic Code Vault ContributorAchievement: Pull Shark

Achievements

Achievement: Arctic Code Vault ContributorAchievement: Pull Shark

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@hms-immunology

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erenada/README.md

Hi there

I am a computational biologist at Harvard Medical School, Department of Immunology. This repo contains some of my professional and personal projects, feel free to take a look at them, use, improve, or contribute. Say Hi to me via erenada@gmail.com

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Last updated: 06/15/2025

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  1. TYPHON TYPHON Public

    Comprehensive chimeric RNA detection pipeline for Nanopore/PacBio long-read sequencing. Integrates three fusion detection tools (LongGF, Genion, JaffaL) with advanced exon repair validation for hig…

    Python 1

  2. RNA_QC_APP RNA_QC_APP Public

    RNA-seq Quality Control and Preprocessing Tool - Interactive Shiny application for comprehensive RNA sequencing data validation, quality assessment, filtering, and normalization. Developed at Harva…

    R 10

  3. RNA_DEG_APP RNA_DEG_APP Public

    RNA-seq Differential Gene Expression Analysis App - Interactive Shiny application for DESeq2-based statistical analysis of gene expression differences between conditions.

    R

  4. mimetic_cells_URD_analyses mimetic_cells_URD_analyses Public

    This repository contains R scripts and documentation for performing dimensionality reduction and trajectory analysis on single-cell RNA sequencing data using URD.

    R

  5. bioinformatics-project-tracker bioinformatics-project-tracker Public

    A comprehensive web application designed specifically for bioinformatics researchers to manage, track, and organize their research projects efficiently. Built with React and modern web technologies…

    JavaScript 6 1

  6. tanggle tanggle Public

    Forked from KlausVigo/tanggle

    phylogenetic networks using ggplot2 and ggtree

    R