v1.1

added multigenome support

v1.0

add support for new RNA modifications in Dorado v1.0.

v0.91

added support for changing modkit threshold

v0.9

• add remap entry point
• added ability to generate report without rerunning rest of workflow.
• added report of output files
• unify DNA and RNA modifications work flow

v0.89

• Update the configuration file to specify the location of dogme.profile
• Implement automatic download of models into the Dogme launch folder if not already present
• Add support for readType=CDNA
• Perform read base calling and kallisto processing only in cDNA mode
• Include a comprehensive report of all software versions used, including model versions when possible
• Add support for readType=DNA
• Implement DNA workflows when readType=DNA is specified
• Modify the minimap2 task to correctly map reads based on readType, supporting DNA mode
• separate modifications by strand for RNA

v0.88

First public release with combined modified basecalling from Dorado to create a single bam file with all modifications.

dogme 0.8

removed hpc3 dependencies from nanoporeModule.nf and moved them to new dogme.profile and conf file.

version 0.72

fixed bugs and added filterbed python script.

version 0.7

Initial script for Dogme running on slurm