Discover differential transcript usage from polyA-captured single cell RNA-seq data

Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.

Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)

Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differential usage across RNA-seq samples

Model-based analysis of APA using 3' end-linked reads

This repo stores codes for the analysis of tasrkleat results on TCGA RNA-Seq dataa

Targeted analysis of alternative polyadenylation of candidate genes with RNA-Seq data

Cleavage site prediction via de novo assembly

A study of Alternative Polyadenylation in developing cortical neurons (timepoints: 0, 4, 30 days) in bulk RNA-seq data. Several lengthening events over time were identified.

3' UTR cleavage site identification from the Mouse Cell Atlas

Determine polyA sites from 3'end sequence data

Home to the development of the TREND-DB application