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[BUG] numpy conflict

Status: Open.

#140 In wfondrie/mokapot;

· lliligabriel opened on Sep 15, 2025

[Issue] TypeError: 'PercolatorModel' object is not iterable. Python 3.7

Status: Open.

#139 In wfondrie/mokapot;

· aaronbanse opened on Sep 5, 2025

[BUG] FDR to QValue Numba Typing Error

Status: Open.

#134 In wfondrie/mokapot;

· singjc opened on Jan 23, 2025

Add (minimal) ProForma support in <code>mokapot.picked_protein.strip_peptides</code>

Status: Open.

#130 In wfondrie/mokapot;

· RalfG opened on Oct 24, 2024

[Issue] docker build stage does not get tested in CI

Status: Open.

#129 In wfondrie/mokapot;

· jspaezp opened on Oct 8, 2024

Also load scaler when loading model

Status: Open.

#124 In wfondrie/mokapot;

· gessulat opened on Aug 1, 2024

Chunksize should be derived from MEMORY env variable

Status: Open.

#123 In wfondrie/mokapot;

· gessulat opened on Aug 1, 2024

Consolidate naming of LinearPSMDataset OnDiskPSMDataset

Status: Open.

#122 In wfondrie/mokapot;

· gessulat opened on Aug 1, 2024

Revert file suffix change for output files

Status: Open.

#121 In wfondrie/mokapot;

· gessulat opened on Aug 1, 2024

Remove MSAID's SQLite output support

Status: Open.

#120 In wfondrie/mokapot;

· gessulat opened on Jul 26, 2024

[Feature Request] mokapot output as a pepXML file

Status: Open.

#118 In wfondrie/mokapot;

· sciordia opened on Apr 20, 2024

Enzyme Free Digestion results in "0 digested proteins"

Status: Open.

#117 In wfondrie/mokapot;

· jonathan-krieger-bruker opened on Dec 18, 2023