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count-variants not runnable without specifying cosmicdb

Status: Open.

#110 In czbiohub-sf/cerebra;

· lincoln-harris opened on Aug 3, 2021

trouble adding to bioconda

Status: Open.

#92 In czbiohub-sf/cerebra;

· lincoln-harris opened on Jul 20, 2020

pysam build fails on python3.8

Status: Open.

#86 In czbiohub-sf/cerebra;

· lincoln-harris opened on Jul 15, 2020

add prebuilt index for genome.fa

enhancementNew feature or requestNew feature or request

wontfixThis will not be worked onThis will not be worked on

Status: Open.

#70 In czbiohub-sf/cerebra;

· lincoln-harris opened on Jun 8, 2020

make germline-filter module more robust

enhancementNew feature or requestNew feature or request

Status: Open.

#67 In czbiohub-sf/cerebra;

· lincoln-harris opened on May 28, 2020

look into potential changes in mutation_counts functionality due to GenomePosition.from_vcf_record change

questionFurther information is requestedFurther information is requested

Status: Open.

#28 In czbiohub-sf/cerebra;

· rvanheusden opened on Jul 16, 2019

GenomePosition.from_str shouldn't assume 1-index

Status: Open.

#26 In czbiohub-sf/cerebra;

· rvanheusden opened on Jul 15, 2019

not picking up intronic variants

enhancementNew feature or requestNew feature or request

Status: Open.

#18 In czbiohub-sf/cerebra;

· lincoln-harris opened on Jun 25, 2019