PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.

paleobuddy: an R package for simulating diversification dynamics, fossil records and phylogenies in R.

Bayesian inference of trait evolution under a “fossilized” Brownian motion.

Data and analyses used in Moon & Stubbs, Communications Biology doi:10.1038/s42003-020-0779-6

Galapagos Islands Testudinidae Macroevolution (GITM)

Paper - A novel function of banded stripes to prevent cannibalism in snake-eating snakes

Infer phylogeny parameters with Deep Learning.

Data, code & figures used to assess global patterns of potential thermal niche filling

Supplementary code and data for "The paradox of predictability"

R scripts to explore global patterns of diversificatio and species richness of current and present-natural mammals

Analysing patterns of phenotypic adaptation across timescales and lineages

Code and data to reproduce all analyses and figures in Hill et al 2023

This repository contains the R code, data, and figures for the paper Vidal-García, M., O'Hanlon, J.C., Svenson, G.J, Umbers, K.D.L. (in press) The evolution of defensive displays in praying mantises. Proceedings of the Royal Society B

Macroevolutionary analyses of the Monodoreae tribe (Annonaceae) 🧬🌳🌍

Paper - Best practices for building and curating databases for comparative analyses

R codes for simulating and detecting punctuated evolution in any clades, from dinosaurs to viruses

Analogy between the protracted birth death model and the classical birth death model

R scripts for the Royal Society Open Science crocodylomorph sinus analysis paper (https://royalsocietypublishing.org/doi/10.1098/rsos.241272)

Code and Figures for Souza Ferreira et al.