Copy number calling and variant classification using targeted short read sequencing
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
Genetic Heterogeneity Profiling by Single Cell RNA Sequencing
Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data
R htmlwidget for Jellyfish
SIFA: identify tumor subclones and infer phylogenetic tree from WGS data
scMuffin - A MUlti-Features INtegrative approach for SC data analysis
Scripts used for the paper Inglese, P., Correia, G., Pruski, P., Glen, R. C., & Takats, Z. (2019). Colocalization features for classification of tumors using desorption electrospray ionization mass spectrometry imaging. Analytical chemistry.
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