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@nfdi4plants

DataPLANT

Services and infrastructures to support #FAIRData science and good data management practices within the plant basic research community. #NFDI.

Hi there 👋 We are DataPLANT

Our mission: Driving the digital change in plant science

DataPLANT’s mission is to provide a sustainable and well annotated data management platform for plant sciences. DataPLANT will pave the way from classical paper publication to pure data publication including the Annotated Research Context (ARC)

The community

DataPlant is primarily geared towards the needs of fundamental plant research (e.g. those represented by the DFG categories 202-[01 evolution and systematics of plants and animals, 04 plant physiology, 05 plant biochemistry and biophysics, 06 plant cell and developmental biology, 07 plant genetics]. As such DataPlant is especially adapter to large scale data sets be it omics science or imaging and is ready to store petabaytes of annotated data.

The Annotated Research Context (ARC)

DataPlant will allow users to store their data in form of an annotated research context. This includes not only the measurement data, but also (meta)data annotations, tools, and scripts. This will allow reproducibility plus to forward “raw data” and metadata slices to public repositories (e.g. EBI NCBI etc.).

More info at https://www.nfdi4plants.org/

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  1. ARCitect ARCitect Public

    Cross-platform app to create and manage ARCs.

    Vue 13 7

  2. DataHUB DataHUB Public

    This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.

    Shell 5 3

  3. ARC-specification ARC-specification Public

    Annotated Research Context - The specification of a general-purpose FAIR digital object

    17 13

  4. Swate Swate Public

    Excel Add-In for annotation of experimental data and computational workflows.

    F# 44 9

  5. ARCtrl ARCtrl Public

    Polyglot (.NET/JS/Python) library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

    F# 18 9

  6. dataplan dataplan Public template

    DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT

    JavaScript 7 11

Repositories

Showing 10 of 88 repositories
  • arc-validation-packages Public

    ARC validation packages for https://avpr.nfdi4plants.org maintained by DataPLANT

    nfdi4plants/arc-validation-packages’s past year of commit activity
    F# 2 MIT 0 2 0 Updated Sep 19, 2025
  • Swate Public

    Excel Add-In for annotation of experimental data and computational workflows.

    nfdi4plants/Swate’s past year of commit activity
    F# 44 MIT 9 25 6 Updated Sep 19, 2025
  • ARCtrl Public

    Polyglot (.NET/JS/Python) library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

    nfdi4plants/ARCtrl’s past year of commit activity
    F# 18 MIT 9 39 (1 issue needs help) 2 Updated Sep 18, 2025
  • ARCCommander Public

    CLI tool to manage your ARCs

    nfdi4plants/ARCCommander’s past year of commit activity
    F# 12 MIT 9 21 2 Updated Sep 18, 2025
  • nfdi4plants.knowledgebase Public

    This is the source repo for the nfdi4plants knowledge base webpage.

    nfdi4plants/nfdi4plants.knowledgebase’s past year of commit activity
    MDX 4 CC-BY-4.0 34 12 2 Updated Sep 18, 2025
  • nfdi4plants_ontology Public

    An intermediate ontology for plants used by DataPLANT to fill the ontology gap

    nfdi4plants/nfdi4plants_ontology’s past year of commit activity
    F# 7 CC-BY-4.0 11 4 0 Updated Sep 18, 2025
  • DataHUB Public

    This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.

    nfdi4plants/DataHUB’s past year of commit activity
    Shell 5 MIT 3 24 0 Updated Sep 17, 2025
  • nfdi4plants.github.io Public

    DataPLANT website made with Astro 🚀

    nfdi4plants/nfdi4plants.github.io’s past year of commit activity
    Astro 5 MIT 17 3 1 Updated Sep 17, 2025
  • elab2arc Public

    A tool to convert electronic lab notebook experiments to Annotated Research Context (ARC) assays

    nfdi4plants/elab2arc’s past year of commit activity
    HTML 1 GPL-3.0 2 0 0 Updated Sep 17, 2025
  • arc-rdm.org Public

    The official ARC website!

    nfdi4plants/arc-rdm.org’s past year of commit activity
    Astro 3 2 7 0 Updated Sep 17, 2025

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