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    88 repositories

    • Swate

      Public
      Excel Add-In for annotation of experimental data and computational workflows.
      educationbiologyontologyisaresearch-data-managementrdmminimal-information
      F#
      •
      MIT License
      •9•44•25•6•Updated Sep 22, 2025Sep 22, 2025

    • arc-validate

      Public
      Libraries and CLI tools for creation, consumption, and execution of ARC validation packages
      dockerunit-testingvalidationexpectofsharpdotnetarcnfdi4plantsdataplantisa-dotnet
      F#
      •
      MIT License
      •3•4•21•15•Updated Sep 22, 2025Sep 22, 2025

    • nfdi4plants_ontology

      Public
      An intermediate ontology for plants used by DataPLANT to fill the ontology gap
      ontologybrokernfdi4plantsdataplantdbpo
      F#
      •
      Creative Commons Attribution 4.0 International
      •11•7•4•0•Updated Sep 20, 2025Sep 20, 2025

    • ARCCommander

      Public
      CLI tool to manage your ARCs
      F#
      •
      MIT License
      •9•12•21•2•Updated Sep 19, 2025Sep 19, 2025

    • arc-validation-packages

      Public
      ARC validation packages for https://avpr.nfdi4plants.org maintained by DataPLANT
      F#
      •
      MIT License
      •0•2•2•0•Updated Sep 19, 2025Sep 19, 2025

    • exceljs

      Public
      Excel Workbook Manager fork compatible with .NET OpenXML standard.
      JavaScript
      •
      MIT License
      •1.9k•1•0•1•Updated Sep 19, 2025Sep 19, 2025

    • ARCtrl

      Public
      Polyglot (.NET/JS/Python) library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.
      fsharpisaarccwlrdmfair-datafable-librariesro-crate
      F#
      •
      MIT License
      •9•18•39•2•Updated Sep 18, 2025Sep 18, 2025

    • nfdi4plants.knowledgebase

      Public
      This is the source repo for the nfdi4plants knowledge base webpage.
      slidestutorialsfaqhow-toknowledge-baseguides
      MDX
      •
      Creative Commons Attribution 4.0 International
      •34•4•12•2•Updated Sep 18, 2025Sep 18, 2025

    • DataHUB

      Public
      This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.
      Shell
      •
      MIT License
      •3•5•24•0•Updated Sep 17, 2025Sep 17, 2025

    • nfdi4plants.github.io

      Public
      DataPLANT website made with Astro 🚀
      Astro
      •
      MIT License
      •17•5•3•1•Updated Sep 17, 2025Sep 17, 2025

    • elab2arc

      Public
      A tool to convert electronic lab notebook experiments to Annotated Research Context (ARC) assays
      HTML
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Sep 17, 2025Sep 17, 2025

    • arc-rdm.org

      Public
      The official ARC website!
      Astro
      •2•3•7•0•Updated Sep 17, 2025Sep 17, 2025

    • swate-template-registry

      Public
      A collection of templates for Swate (https://github.com/nfdi4plants/Swate).
      C#
      •
      MIT License
      •20•5•8•0•Updated Sep 15, 2025Sep 15, 2025

    • metadataquiz

      Public
      HTML
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Sep 12, 2025Sep 12, 2025

    • ARCitect

      Public
      Cross-platform app to create and manage ARCs.
      Vue
      •7•13•55•3•Updated Sep 11, 2025Sep 11, 2025

    • training-material

      Public
      Training material of DataPLANT workshops and classes
      HTML
      •
      Creative Commons Attribution 4.0 International
      •5•0•2•1•Updated Sep 9, 2025Sep 9, 2025

    • spreadsheet-fragment-identifiers

      Public
      lightweight fragment identifier spec for spreadsheet formats.
      fragmentsdataspreadsheetspecification
      MIT License
      •0•0•0•0•Updated Sep 9, 2025Sep 9, 2025

    • ARCtrl.Querymodel

      Public
      This library contains reader functions to interact with the different formats present in an ARC
      F#
      •
      MIT License
      •1•5•5•1•Updated Sep 8, 2025Sep 8, 2025

    • arc-wr-ro-crate-profile

      Public
      F#
      •
      MIT License
      •0•0•13•0•Updated Sep 7, 2025Sep 7, 2025

    • DataHUB-cluster

      Public
      The DataHUB cluster project is an Ansible library for deploying and managing a cloud-based Gitlab cluster.
      Jinja
      •
      MIT License
      •0•0•0•0•Updated Sep 5, 2025Sep 5, 2025

    • arc-datamap-ro-crate-profile

      Public
      MIT License
      •0•0•4•0•Updated Sep 5, 2025Sep 5, 2025

    • BOAT-Builder-for-Ontology-Annotation-Tables

      Public
      This tool/website is for a user friendly creating of an Annotation table (essay or study) out of your free text protocols with self-annotated ontology labeled terms. These templates can be used in your ARC afterwards.
      F#
      •0•2•10•0•Updated Aug 29, 2025Aug 29, 2025

    • ARCSummary

      Public
      Library to create or update markdown content of ARCs dynamically
      F#
      •3•2•9•0•Updated Aug 27, 2025Aug 27, 2025

    • dataplan

      Public template
      DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT
      documentgeneration
      JavaScript
      •
      GNU General Public License v3.0
      •11•7•5•0•Updated Aug 26, 2025Aug 26, 2025

    • archigator-backend

      Public
      Archigator, a publicaton tool from Gitlab to Invenio
      Python
      •
      GNU Affero General Public License v3.0
      •0•1•2•0•Updated Aug 25, 2025Aug 25, 2025

    • arc-validate-package-registry

      Public
      A repository of validation packages for ARCs
      F#
      •
      MIT License
      •4•3•15•0•Updated Aug 20, 2025Aug 20, 2025

    • invenio-previewer-ro-crate

      Public
      Invenio module for previewing files.
      Python
      •
      MIT License
      •62•0•0•0•Updated Aug 18, 2025Aug 18, 2025

    • arc-export

      Public
      Containerized CLI tool for exporting ARCs to other formats such as ISA-JSON or RO-Crate
      F#
      •
      MIT License
      •1•3•3•7•Updated Jul 31, 2025Jul 31, 2025

    • arcmanager_frontend

      Public
      Web-based application for creating and managing your ARCs directly on the DataHUB.
      Vue
      •
      GNU Affero General Public License v3.0
      •1•0•1•0•Updated Jul 23, 2025Jul 23, 2025

    • arcmanager_backend

      Public
      FastAPI backend for the ARCmanager.
      Python
      •
      GNU Affero General Public License v3.0
      •1•0•0•0•Updated Jul 17, 2025Jul 17, 2025